Commit a47029d5 authored by Mathieu Giraud's avatar Mathieu Giraud

doc/algo.org: correct default value for -r

parent 19c15222
...@@ -284,7 +284,7 @@ The following options control how many clones are output and analyzed. ...@@ -284,7 +284,7 @@ The following options control how many clones are output and analyzed.
#+BEGIN_EXAMPLE #+BEGIN_EXAMPLE
Limits to report a clone (or a window) Limits to report a clone (or a window)
-r <nb> minimal number of reads supporting a clone (default: 10) -r <nb> minimal number of reads supporting a clone (default: 5)
-% <ratio> minimal percentage of reads supporting a clone (default: 0) -% <ratio> minimal percentage of reads supporting a clone (default: 0)
Limits to further analyze some clones Limits to further analyze some clones
...@@ -296,7 +296,7 @@ Limits to further analyze some clones ...@@ -296,7 +296,7 @@ Limits to further analyze some clones
The =-r/-%= options are strong thresholds: if a clone does not have The =-r/-%= options are strong thresholds: if a clone does not have
the requested number of reads, the clone is discarded (except when the requested number of reads, the clone is discarded (except when
using =-l=, see below). using =-l=, see below).
The default =-r 10= option is meant to only output clones that The default =-r 5= option is meant to only output clones that
have a significant read support. *You should use* =-r 1= *if you have a significant read support. *You should use* =-r 1= *if you
want to detect all clones starting from the first read* (especially for want to detect all clones starting from the first read* (especially for
MRD detection). MRD detection).
......
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