Commit a3dba9fe authored by Mathieu Giraud's avatar Mathieu Giraud
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vidjil: prepare CHANGELOG for release 2014.10

(Paris)
parent 633e4e83
This changelog concerns the algorithmic part (C++) of Vidjil.
2014-10-XX The Vidjil Team
* Streamlined filtering options (-r/-y/-z), better documented (doc/algo.org)
* Streamlined output files (xxxxxxxxxx)
* Updated .data .json output, now in the stable 2014.10 format (documented in doc/format-analysis.org)
* New experimental multi-germline analysis (-g). This will be improved and documented in a next release.
* Refactored main vidjil.cpp, objects storing germlines and statistics (core/germline.cpp, core/stats.cpp)
* Transferred clustering from clone output to information in .data, again simplifying vidjil.cpp
* Removed unused code parts as well as some files
* Bugs closed
2014-09-23 The Vidjil Team
* Export cause of non-segmentation in the .data
* New option to output segmented reads (-U), now by default segmented reads are not output one by one
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