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vidjil
vidjil
Commits
9f9a2289
Commit
9f9a2289
authored
Nov 11, 2020
by
Ryan Herbert
Browse files
add some debut logs for timing
parent
dfbaffcf
Pipeline
#185667
failed with stages
in 9 minutes and 18 seconds
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
server/web2py/applications/vidjil/controllers/my_account.py
View file @
9f9a2289
...
...
@@ -121,7 +121,11 @@ def index():
search
,
tags
=
parse_search
(
request
.
vars
[
"filter"
])
result
=
{}
perm_start
=
time
.
time
()
perm_query
=
get_permissions
(
group_list
)
log
.
debug
(
"permission query: (%0.3fs)"
%
(
time
.
time
()
-
perm_start
))
init_data_start
=
time
.
time
()
for
r
in
perm_query
:
if
(
r
.
auth_group
.
role
not
in
result
):
result
[
r
.
auth_group
.
role
]
=
{}
...
...
@@ -134,6 +138,7 @@ def index():
result
[
r
.
auth_group
.
role
][
'analyses'
]
=
[]
result
[
r
.
auth_group
.
role
][
'tags'
]
=
[]
result
[
r
.
auth_group
.
role
][
'permissions'
]
=
""
if
r
.
_extra
[
group_permissions
()]
is
None
else
r
.
_extra
[
group_permissions
()]
log
.
debug
(
"initialisation: (%0.3fs)"
%
(
time
.
time
()
-
init_data_start
))
query
=
access_query
(
group_list
)
if
(
tags
is
not
None
and
len
(
tags
)
>
0
):
...
...
@@ -171,7 +176,9 @@ def index():
]
queries
=
{}
queries_start
=
time
.
time
()
for
set_type
in
[
'patient'
,
'run'
,
'generic'
]:
tmp_start
=
time
.
time
()
key
=
'set'
if
set_type
==
'generic'
else
set_type
set_query
=
(
query
&
(
db
[
set_type
].
sample_set_id
==
db
.
auth_permission
.
record_id
))
...
...
@@ -184,9 +191,13 @@ def index():
groupby
=
(
db
.
auth_group
.
role
,
db
.
sample_set
.
sample_type
),
orderby
=~
db
.
scheduler_task
.
start_time
)
log
.
debug
(
"
\t
%s query: (%0.3fs)"
%
(
set_type
,
time
.
time
()
-
tmp_start
))
log
.
debug
(
"total queries: (%0.3fs)"
%
(
time
.
time
()
-
queries_start
))
list_size
=
50
aggregation_start
=
time
.
time
()
for
key
in
queries
:
# patient, run, set
tmp_start
=
time
.
time
()
query
=
queries
[
key
]
for
r
in
query
:
# 1 or 0 rows
result
[
r
.
auth_group
.
role
][
key
][
'count'
][
'num_sets'
]
+=
r
.
num_sets
...
...
@@ -201,11 +212,15 @@ def index():
analyses
=
[]
if
r
.
_extra
[
group_analyses
[
key
]]
is
None
else
[
analysis
.
split
(
';'
)
for
analysis
in
r
.
_extra
[
group_analyses
[
key
]].
split
(
','
)]
result
[
r
.
auth_group
.
role
][
'analyses'
]
+=
analyses
[:
list_size
]
log
.
debug
(
"
\t
%s aggregation: (%0.3fs)"
%
(
key
,
time
.
time
()
-
tmp_start
))
log
.
debug
(
"total data aggregation: (%0.3fs)"
%
(
time
.
time
()
-
aggregation_start
))
tags_start
=
time
.
time
()
tags
=
get_most_used_tags
(
group_list
)
# list tags used without filtering
for
r
in
tags
:
if
(
r
.
tag
.
name
is
not
None
):
result
[
r
.
auth_group
.
role
][
'tags'
].
append
(
"%s (%d)"
%
(
r
.
tag
.
name
,
r
.
count
))
log
.
debug
(
"most used tags: (%0.3fs)"
%
(
time
.
time
()
-
tags_start
))
involved_group_ids
=
get_involved_groups
()
# for search autocomplete
...
...
Ryan Herbert
@RyanHerb
mentioned in commit
b9e1a5bb
·
Nov 13, 2020
mentioned in commit
b9e1a5bb
mentioned in commit b9e1a5bbcb93538781d2695f5b55dcc776a77491
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