Commit 9d903e2e authored by Mikaël Salson's avatar Mikaël Salson
Browse files

Algo: Removes unused declarations

Makes the compiler happy too.

This, together with commits d0ccbacd 4c5a51d8 and 61c5c497, solves all
compilation warnings except the ones coming from an unused parameter (which
can make sense).
parent 61c5c497
......@@ -112,7 +112,6 @@ list<list<junction> > comp_matrix::cluster(string forced_edges, int w, ostream
typedef map<junction,list<Sequence> > mjs ;
typedef list<string> li ;
map <string, map <string, bool> > graph ;
......
......@@ -611,7 +611,6 @@ void FineSegmenter::FineSegmentD(Fasta &rep_V, Fasta &rep_D, Fasta &rep_J){
int tag_D;
int length = 0 ;
int begin = 0;
int score;
// Create a zone where to look for D, adding at most EXTEND_D_ZONE nucleotides at each side
int l = Vend - EXTEND_D_ZONE;
......@@ -629,7 +628,6 @@ void FineSegmenter::FineSegmentD(Fasta &rep_V, Fasta &rep_D, Fasta &rep_J){
end = align_against_collection(str, rep_D, false, true, &tag_D, &del_D_right, &del_D_left, &begin,
&length, &score_D, segment_cost);
score=score_D[0].first;
best_D = tag_D;
Dstart = l + begin;
......
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