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vidjil
vidjil
Commits
9d83caa1
Commit
9d83caa1
authored
Sep 15, 2017
by
Mathieu Giraud
Browse files
get-CD.py: fix paths, one year later
parent
5b613d82
Changes
1
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Side-by-side
germline/get-CD.py
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9d83caa1
...
...
@@ -18,9 +18,9 @@ NCBI_API = 'http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&
# Common CD used to sort cells, see https://en.wikipedia.org/wiki/Cluster_of_differentiation
SORTING_CD
=
[
'CD3g'
,
'CD3d'
,
'CD3e'
,
'CD4'
,
'CD8a'
,
'CD8b'
,
'CD11a'
,
'CD11b'
,
'CD14'
,
'CD15'
,
'CD16a'
,
'CD16b'
,
'CD19'
,
'CD20'
,
'CD22'
,
'CD24'
,
'CD25'
,
'CD30'
,
'CD31'
,
'CD34'
,
'CD38'
,
'CD45'
,
'CD56'
,
'CD61'
,
'CD91'
,
'CD114'
,
'CD117'
,
'CD182'
]
OUT
=
'CD.fa'
OUT
=
'
homo-sapiens/
CD.fa'
SORTING_OUT
=
'CD-sorting.fa'
SORTING_OUT
=
'
homo-sapiens/
CD-sorting.fa'
print
"==>"
,
OUT
out
=
open
(
OUT
,
'w'
)
...
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