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vidjil
vidjil
Commits
9d5c767d
Commit
9d5c767d
authored
May 20, 2014
by
Marc Duez
Browse files
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Plain Diff
segmenter.js : color D
parent
8470a5bf
Changes
2
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
with
54 additions
and
16 deletions
+54
-16
browser/css/vidjil.less
browser/css/vidjil.less
+4
-0
browser/js/segmenter.js
browser/js/segmenter.js
+50
-16
No files found.
browser/css/vidjil.less
View file @
9d5c767d
...
...
@@ -468,6 +468,10 @@ max-height: calc(~"100%" - @margin)
letter-spacing: 0.12em;
}
.D {
color: #fb000d;
}
/*tag*/
#tagSelector{
...
...
browser/js/segmenter.js
View file @
9d5c767d
...
...
@@ -240,7 +240,7 @@ Segment.prototype = {
spanV
.
style
.
color
=
this
.
m
.
windows
[
cloneID
].
colorV
;
var
v_seq
=
this
.
m
.
windows
[
cloneID
].
sequence
.
substr
(
0
,
this
.
m
.
windows
[
cloneID
].
Vend
+
1
);
var
size_marge
=
2
00
-
v_seq
.
length
;
var
size_marge
=
3
00
-
v_seq
.
length
;
if
(
size_marge
>
0
){
var
marge
=
""
;
for
(
var
i
=
0
;
i
<
size_marge
;
i
++
)
marge
+=
"
 
"
;
...
...
@@ -251,11 +251,26 @@ Segment.prototype = {
spanM
.
appendChild
(
spanV
);
if
(
(
this
.
m
.
windows
[
cloneID
].
Vend
+
1
-
this
.
m
.
windows
[
cloneID
].
Jstart
)
!=
0
){
var
spanN
=
document
.
createElement
(
'
span
'
);
spanN
.
className
=
"
N
"
;
spanN
.
innerHTML
=
this
.
m
.
windows
[
cloneID
].
sequence
.
substring
(
this
.
m
.
windows
[
cloneID
].
Vend
+
1
,
this
.
m
.
windows
[
cloneID
].
Jstart
);
spanM
.
appendChild
(
spanN
);
if
(
typeof
this
.
m
.
windows
[
cloneID
].
Dstart
!=
'
undefined
'
&&
typeof
this
.
m
.
windows
[
cloneID
].
Dend
!=
'
undefined
'
){
var
spanN1
=
document
.
createElement
(
'
span
'
);
spanN1
.
className
=
"
N
"
;
spanN1
.
innerHTML
=
this
.
m
.
windows
[
cloneID
].
sequence
.
substring
(
this
.
m
.
windows
[
cloneID
].
Vend
+
1
,
this
.
m
.
windows
[
cloneID
].
Dstart
);
spanM
.
appendChild
(
spanN1
);
var
spanD
=
document
.
createElement
(
'
span
'
);
spanD
.
className
=
"
D
"
;
spanD
.
innerHTML
=
this
.
m
.
windows
[
cloneID
].
sequence
.
substring
(
this
.
m
.
windows
[
cloneID
].
Dstart
,
this
.
m
.
windows
[
cloneID
].
Dend
+
1
);
spanM
.
appendChild
(
spanD
);
var
spanN2
=
document
.
createElement
(
'
span
'
);
spanN2
.
className
=
"
N
"
;
spanN2
.
innerHTML
=
this
.
m
.
windows
[
cloneID
].
sequence
.
substring
(
this
.
m
.
windows
[
cloneID
].
Dend
+
1
,
this
.
m
.
windows
[
cloneID
].
Jstart
);
spanM
.
appendChild
(
spanN2
);
}
else
{
var
spanN
=
document
.
createElement
(
'
span
'
);
spanN
.
className
=
"
N
"
;
spanN
.
innerHTML
=
this
.
m
.
windows
[
cloneID
].
sequence
.
substring
(
this
.
m
.
windows
[
cloneID
].
Vend
+
1
,
this
.
m
.
windows
[
cloneID
].
Jstart
);
spanM
.
appendChild
(
spanN
);
}
var
spanJ
=
document
.
createElement
(
'
span
'
);
...
...
@@ -264,7 +279,7 @@ Segment.prototype = {
spanJ
.
innerHTML
=
this
.
m
.
windows
[
cloneID
].
sequence
.
substr
(
this
.
m
.
windows
[
cloneID
].
Jstart
);
spanM
.
appendChild
(
spanJ
);
}
else
{
var
size_marge
=
2
20
-
this
.
m
.
windows
[
cloneID
].
window
.
length
;
var
size_marge
=
3
20
-
this
.
m
.
windows
[
cloneID
].
window
.
length
;
var
marge
=
""
;
for
(
var
i
=
0
;
i
<
size_marge
;
i
++
)
marge
+=
"
 
"
;
var
spanJunc
=
document
.
createElement
(
'
span
'
);
...
...
@@ -364,7 +379,6 @@ Segment.prototype = {
}
//fin prototype
function
displayAjaxResult
(
file
){
...
...
@@ -375,13 +389,18 @@ Segment.prototype = {
// global container
var
spanM
=
document
.
getElementById
(
"
m
"
+
memTab
[
i
]);
spanM
.
innerHTML
=
""
;
// V gene container
var
spanV
=
document
.
createElement
(
'
span
'
);
spanV
.
className
=
"
V
"
;
spanV
.
style
.
color
=
m
.
windows
[
memTab
[
i
]].
colorV
;
// N region container
var
spanN
=
document
.
createElement
(
'
span
'
);
spanN
.
className
=
"
N
"
;
var
spanN1
=
document
.
createElement
(
'
span
'
);
spanN1
.
className
=
"
N
"
;
var
spanD
=
document
.
createElement
(
'
span
'
);
spanD
.
className
=
"
D
"
;
var
spanN2
=
document
.
createElement
(
'
span
'
);
spanN2
.
className
=
"
N
"
;
// J gene container
var
spanJ
=
document
.
createElement
(
'
span
'
);
spanJ
.
className
=
"
J
"
;
...
...
@@ -390,11 +409,14 @@ Segment.prototype = {
if
(
typeof
m
.
windows
[
memTab
[
i
]].
sequence
!=
'
undefined
'
&&
m
.
windows
[
memTab
[
i
]].
sequence
!=
0
){
var
newVend
=
getNewPosition
(
json
.
seq
[
i
],
m
.
windows
[
memTab
[
i
]].
Vend
)
var
newJstart
=
getNewPosition
(
json
.
seq
[
i
],
m
.
windows
[
memTab
[
i
]].
Jstart
)
console
.
log
(
m
.
windows
[
memTab
[
i
]].
Vend
+
"
/
"
+
m
.
windows
[
memTab
[
i
]].
Jstart
+
"
//
"
+
newVend
+
"
/
"
+
newJstart
+
"
//
"
+
memTab
[
i
]
)
var
newDstart
=
-
1
var
newDend
=
-
1
if
(
typeof
this
.
m
.
windows
[
memTab
[
i
]].
Dstart
!=
'
undefined
'
&&
typeof
this
.
m
.
windows
[
memTab
[
i
]].
Dend
!=
'
undefined
'
){
var
newDstart
=
getNewPosition
(
json
.
seq
[
i
],
m
.
windows
[
memTab
[
i
]].
Dstart
)
var
newDend
=
getNewPosition
(
json
.
seq
[
i
],
m
.
windows
[
memTab
[
i
]].
Dend
)
}
var
str
=
""
;
for
(
var
k
=
0
;
k
<
json
.
seq
[
i
].
length
;
k
++
){
if
(
json
.
seq
[
i
][
k
]
==
json
.
seq
[
0
][
k
]
){
...
...
@@ -408,8 +430,18 @@ Segment.prototype = {
str
=
""
}
if
(
k
==
newDstart
){
spanN1
.
innerHTML
=
str
str
=
""
}
if
(
k
==
newDend
){
spanD
.
innerHTML
=
str
str
=
""
}
if
(
k
==
newJstart
){
spanN
.
innerHTML
=
str
spanN
2
.
innerHTML
=
str
str
=
""
}
...
...
@@ -417,7 +449,9 @@ Segment.prototype = {
spanJ
.
innerHTML
=
str
spanM
.
appendChild
(
spanV
);
spanM
.
appendChild
(
spanN
);
spanM
.
appendChild
(
spanN1
);
spanM
.
appendChild
(
spanD
);
spanM
.
appendChild
(
spanN2
);
spanM
.
appendChild
(
spanJ
);
}
else
{
var
spanJunc
=
document
.
createElement
(
'
span
'
);
...
...
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