@@ -237,7 +237,7 @@ parser.add_argument('--top', '-t', type=int, default=MAX_TOP, help = 'Keep only
parser.add_argument('--no-header-whitespace','-w',action='store_true',help='Replace all whitespaces in the fasta header with '+REPLACEMENT_WHITESPACE)
parser.add_argument('--output','-o',help='Name of the output FASTA file [REQUIRED]',required=True)
parser.add_argument('--sample-name','-n',default='',help='Provide the sample name in the fasta header. Some Python code can be provided as soon as it returns a string')
parser.add_argument('--metadata','-d',action='append',help='Provide metadata for each file. The option must be called each time for each file, in the same order as the files are given')
parser.add_argument('--metadata','-d',default=[],action='append',help='Provide metadata for each file. The option must be called each time for each file, in the same order as the files are given')
parser.add_argument('--germline','-g',action='store_true',help='When set, provide the germline of the sequence in the additional header informations')