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vidjil
vidjil
Commits
94f44633
Commit
94f44633
authored
Jan 30, 2017
by
Mathieu Giraud
Browse files
tests: update tests
parent
6226ac4a
Changes
4
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algo/tests/should-get-tests/chimera-fake-VJ-germlines.should-get
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94f44633
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -A -g $VIDJIL_DIR/data/chimera-fake-VJ.g
ermlines
-i $VIDJIL_DIR/data/chimera-fake-VJ.fa
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -A -g $VIDJIL_DIR/data/chimera-fake-VJ.g -i $VIDJIL_DIR/data/chimera-fake-VJ.fa
# Testing a custom (fake) germlines.data
$ Report the species
...
...
algo/tests/should-get-tests/several-g.should-get
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94f44633
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline -g $VIDJIL_DIR/germline/isotypes.g
ermlines
-i $VIDJIL_DIR/data/isotypes.fa
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline -g $VIDJIL_DIR/germline/isotypes.g -i $VIDJIL_DIR/data/isotypes.fa
$ Report the correct species
1: Homo sapiens .9606.
...
...
algo/tests/should-get-tests/vidjil-error-incorrect-germlines.should-get
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!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline/Makefile 2>&1
!EXIT_CODE: 1
$ Error, incorrect *.g
ermlines
1:error.* cannot properly read
.*germline
$ Error, incorrect *.g
1:error.* cannot properly read
data/chimera-fake-VJ.g
ermlines
→
data/chimera-fake-VJ.g
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94f44633
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