Merge branch 'feature-c/update_tests_with_germline_2021' into 'dev'

qunit; update some tests with germline sequence

Closes #4749

See merge request !936

browser/test/QUnit/testFiles/model_test.js

@@ -478,7 +478,7 @@ QUnit.test("findGermlineFromGene", function(assert) {
     gene3a_name = "IGHJ6*01"
     gene3a_seq  = "......attactactactactacggtatggacgtctgggggcaagggaccacggtcaccgtctcctcag"
     gene3b_name = "TRGJ1*02"
-    gene3b_seq  = "...................ttattataagaaactctttggcagtggaacaacacttgttgtcacag"
+    gene3b_seq  = "................gaattattataagaaactctttggcagtggaacaacacttgttgtcacag"
     var getted = m.findGermlineFromGene(gene5_name)
     assert.equal(getted, gene5_seq, 'function return the correct sequence for the gene V: IGHV1-18*01')
 

browser/test/QUnit/testFiles/segmenter_test.js

@@ -210,15 +210,15 @@ QUnit.test("segt", function (assert) {
     segment.update();
     m.select(2)
     segment.addGermlineToSegmenter("IGHD1-1*01","IGH");
-    assert.equal(segment.sequence["IGHD1-1*01"].seq.join("").toUpperCase(), "GGGCGCCGGGGCAGATTCTGAACAGCCCCGAGTCACGGTGGGTACAACTGGAACGAC")
-    assert.equal(segment.sequence["IGHD1-1*01"].is_clone, false);
+    assert.equal(segment.sequence["IGHD1-1*01"].seq.join("").toUpperCase(), "CCAGGAGGCCCCAGAGCTCAGGGCGCCGGGGCAGATTCTGAACAGCCCCGAGTCACGGTGGGTACAACTGGAACGAC", "seq.join IGHD1-1*01")
+    assert.equal(segment.sequence["IGHD1-1*01"].is_clone, false, "segment sequence is_clone");
     segment.addToSegmenter(2);
     segment.add_all_germline_to_segmenter();
     // segment.updateElem()
     assert.equal(segment.sequence[2].seq.join(" "),"c c c c c c c c c c c c c c c c c c c c", "clone 3 sequence")
-    assert.equal(segment.sequence["IGHV1-2*01"].seq.join("").toLowerCase(),"caggtgcagctggtgcagtctggggctgaggtgaagaagcctggggcctcagtgaaggtctcctgcaaggcttctggatacaccttcaccggctactatatgcactgggtgcgacaggcccctggacaagggcttgagtggatgggacggatcaaccctaacagtggtggcacaaactatgcacagaagtttcagggcagggtcaccagtaccagggacacgtccatcagcacagcctacatggagctgagcaggctgagatctgacgacacggtcgtgtattactgtgcgagaga","5 germline")
-    assert.equal(segment.sequence["IGHD2-2*02"].seq.join("").toUpperCase(),"GCGGGGACAGGAGGATTTTGTGGGGGCTCGTGTCACTGTGAGGATATTGTAGTAGTACCAGCTGCTATACC","4 germline")
-    assert.equal(segment.sequence["IGHJ6*01"].seq.join("").toLowerCase(),"attactactactactacggtatggacgtctgggggcaagggaccacggtcaccgtctcctcagaagaatggccactctagggcctttgttttctgctactgcc","3 germline")
+    assert.equal(segment.sequence["IGHV1-2*01"].seq.join("").toLowerCase(),"caggtgcagctggtgcagtctggggctgaggtgaagaagcctggggcctcagtgaaggtctcctgcaaggcttctggatacaccttcaccggctactatatgcactgggtgcgacaggcccctggacaagggcttgagtggatgggacggatcaaccctaacagtggtggcacaaactatgcacagaagtttcagggcagggtcaccagtaccagggacacgtccatcagcacagcctacatggagctgagcaggctgagatctgacgacacggtcgtgtattactgtgcgagaga","5 germline (IGHV1-2*01)")
+    assert.equal(segment.sequence["IGHD2-2*02"].seq.join("").toUpperCase(),"GAGGGGACTCAGTGACTCCCGCGGGGACAGGAGGATTTTGTGGGGGCTCGTGTCACTGTGAGGATATTGTAGTAGTACCAGCTGCTATACC","4 germline (IGHD2-2*02)")
+    assert.equal(segment.sequence["IGHJ6*01"].seq.join("").toLowerCase(),"attactactactactacggtatggacgtctgggggcaagggaccacggtcaccgtctcctcagaagaatggccactctagggcctttgttttctgctactgcctgtggggtttcctgagcatt","3 germline (IGHJ6*01)")
 
     segment.addSequenceTosegmenter("test","igh", "accccccgtgtagtagtcc")
     assert.equal(segment.sequence["test"].seq.join("").toLowerCase(),"accccccgtgtagtagtcc"," test sequence ")