Commit 9116f21b authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil.cpp: define and use CLONE_DIR

parent b79b98b6
......@@ -97,6 +97,7 @@ enum { CMD_WINDOWS, CMD_CLONES, CMD_SEGMENT, CMD_GERMLINES } ;
// Fixed filenames/suffixes
#define CLONES_FILENAME ".vdj.fa"
#define CLONE_DIR "seq/"
#define CLONE_FILENAME "clone.fa-"
#define WINDOWS_FILENAME ".windows.fa"
#define SEGMENTED_FILENAME ".detected.vdj.fa"
......@@ -700,7 +701,7 @@ int main (int argc, char **argv)
for(string lab : windows_labels_explicit)
windows_labels[lab] = string("--label");
string out_seqdir = out_dir + "/seq/" ;
string out_seqdir = out_dir + "/" + CLONE_DIR ;
if (verbose)
cout << "# verbose " << verbose << endl ;
......
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