Commit 8d951c8c authored by Mathieu Giraud's avatar Mathieu Giraud

test: testing a custom 'germlines.data' file

parent d50c2127
!LAUNCH: ../../vidjil -A -g ../../data/chimera-fake-VJ-germlines.data -i ../../data/chimera-fake-VJ.fa
# Testing a custom (fake) germlines.data
$ Loads from 'chimera-fake-VJ-germlines.data' a custom germline
1: Y-.* s14 k13
$ Loads from 'chimera-fake-VJ-germlines.data' a custom germline with two possibilities of recombinations
2: Z-.* s13 k12
$ The KmerSegmenter segments the three chimera reads
1:Y-.* -> .* 1
1:Z-.* -> .* 2
{
"Y-Vb/Jg": {
"shortcut": "y",
"description": "Fake chimera locus",
"recombinations": [ {
"5": ["../germline/TRBV.fa"],
"3": ["../germline/TRGJ.fa"]
} ],
"parameters": {
"seed": "13s"
}
},
"Z-Vd/Jh-or-Vk/Jl": {
"shortcut": "z",
"description": "Fake chimera locus, with two different recombinations",
"recombinations": [ {
"5": ["../germline/TRDV.fa"],
"3": ["../germline/IGHJ.fa"]
},
{
"5": ["../germline/IGKV.fa"],
"3": ["../germline/IGLJ.fa"]
} ],
"parameters": {
"seed": "12s"
}
}
}
\ No newline at end of file
Markdown is supported
0%
or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment