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vidjil
vidjil
Commits
8d2a6859
Commit
8d2a6859
authored
Oct 05, 2018
by
Vidjil
Committed by
Mathieu Giraud
Oct 05, 2018
Browse files
sample_set.py: Less debug information
parent
dac836cc
Pipeline
#42586
failed with stages
in 5 minutes and 3 seconds
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
server/web2py/applications/vidjil/controllers/sample_set.py
View file @
8d2a6859
...
...
@@ -682,7 +682,6 @@ def getStatHeaders():
def
getFusedStats
(
file_name
,
res
,
dest
):
log
.
debug
(
"getFusedStats()"
)
file_path
=
"%s%s"
%
(
defs
.
DIR_RESULTS
,
file_name
)
log
.
debug
(
"file_path: %s"
%
file_path
)
parser
=
VidjilParser
()
parser
.
addPrefix
(
'clones.item'
,
'clones.item.top'
,
operator
.
le
,
100
)
parser
.
addPrefix
(
"reads"
)
...
...
@@ -743,7 +742,6 @@ def getResultsStats(file_name, dest):
import
ijson.backends.yajl2_cffi
as
ijson
log
.
debug
(
"getResultsStats()"
)
file_path
=
"%s%s"
%
(
defs
.
DIR_RESULTS
,
file_name
)
log
.
debug
(
"file_path: %s"
%
file_path
)
distributions
=
[]
with
open
(
file_path
,
'rb'
)
as
results
:
i
=
"1"
...
...
@@ -852,8 +850,6 @@ def multi_sample_stats():
)
permitted_results_ids
=
[
r
.
results_file_id
for
r
in
permitted_results
]
log
.
debug
(
"multi_sample_stats premitted: "
+
str
(
permitted_results_ids
))
log
.
debug
(
"multi_sample_stats requested: "
+
str
(
custom_result
))
if
set
(
permitted_results_ids
)
!=
set
(
custom_result
):
res
=
{
"message"
:
ACCESS_DENIED
}
log
.
error
(
res
)
...
...
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