move group_concat to model

server/web2py/applications/vidjil/models/SampleSet.py

@@ -189,3 +189,14 @@ def get_sample_set_id_from_results_file(results_file_id):
                 ).select(db.sample_set_membership.sample_set_id).first().sample_set_id
     return sample_set_id
 
+def get_conf_list_select():
+    return "GROUP_CONCAT(DISTINCT CONCAT(config.id, ',', config.name, ',', fused_file.fused_file) SEPARATOR ';')"
+
+def get_config_ids_select():
+    return "GROUP_CONCAT(DISTINCT config.id)"
+
+def get_config_names_select():
+    return "GROUP_CONCAT(DISTINCT config.name)"
+
+def get_group_names_select():
+    return "GROUP_CONCAT(DISTINCT auth_group.role)"

server/web2py/applications/vidjil/models/sample_set_list.py

@@ -6,6 +6,45 @@ class SampleSetList():
     '''
     def __init__(self, type, page=None, step=None, tags=None):
         self.type = type
+        s_table = db[type]
+
+        left = [db.sample_set_membership.on(s_table.sample_set_id == db.sample_set_membership.sample_set_id),
+                db.sequence_file.on(db.sample_set_membership.sequence_file_id == db.sequence_file.id),
+                db.fused_file.on(s_table.sample_set_id == db.fused_file.sample_set_id),
+                db.config.on(db.fused_file.config_id == db.config.id)
+                ]
+
+        group_configs = get_conf_list_select()
+        group_config_ids = get_config_ids_select()
+        group_config_names = get_config_names_select()
+        group_group_names = get_group_names_select()
+
+
+        self.result = []
+
+        print(db(
+            (s_table.sample_set_id > 0) &
+            (s_table.creator == db.auth_user.id)
+        )._select(
+            s_table.id.with_alias('id'),
+            s_table.sample_set_id.with_alias('sample_set_id'),
+            s_table.first_name.with_alias('first_name'),
+            s_table.last_name.with_alias('last_name'),
+            s_table.birth.with_alias('birth'),
+            s_table.info.with_alias('info'),
+            db.auth_user.last_name.with_alias('creator'),
+            db.sequence_file.size_file.sum().with_alias('size'),
+            db.sequence_file.id.count().with_alias('file_count'),
+            group_configs,
+            group_config_ids,
+            group_config_names,
+            #group_group_names,
+            left=left,
+            groupby= (s_table.id, s_table.sample_set_id, s_table.first_name, s_table.last_name, s_table.birth, s_table.info, db.auth_user.last_name),
+            orderby = ~db[type].id,
+            limitby=(0,1),
+            cacheable=True
+        ))
 
         limitby = None
         if page is not None and step is not None: