core/segment.cpp, MAX12: use sortLeftRight() to sort the two most frequent KmerAffects

888d0c69 · Mathieu Giraud · 10b0e66e · 888d0c69
Commit 888d0c69 authored Mar 16, 2015 by Mathieu Giraud
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algo/core/segment.cpp algo/core/segment.cpp +1 -1

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--- a/algo/core/segment.cpp
+++ b/algo/core/segment.cpp
@@ -243,7 +243,7 @@ KmerSegmenter::KmerSegmenter(Sequence seq, Germline *germline)
      forbidden.insert(KmerAffect::getUnknown());

      CountKmerAffectAnalyser ckaa(*(germline->index), sequence);
-      pair <KmerAffect, KmerAffect> max12 = ckaa.max12(forbidden);
+      pair <KmerAffect, KmerAffect> max12 = ckaa.sortLeftRight(ckaa.max12(forbidden));

      strand = nb_strand[0] > nb_strand[1] ? -1 : 1 ;
      computeSegmentation(strand, max12.first, max12.second);