Commit 86f6adc1 authored by Mathieu Giraud's avatar Mathieu Giraud

tests: testing option '-#'

parent 75d09b9d
!LAUNCH: ../../vidjil -k 16 -z 0 -w 60 -r 5 -o out2 -u -U -v -G ../../germline/IGH ../../data/Stanford_S22.fasta ; tail out2/Stanford_S22.segmented.vdj.fa ; grep UNSEG out2/Stanford_S22.unsegmented.vdj.fa
!LAUNCH: ../../vidjil -\# FA -k 16 -z 0 -w 60 -r 5 -o out2 -u -U -v -G ../../germline/IGH ../../data/Stanford_S22.fasta ; tail out2/Stanford_S22.segmented.vdj.fa ; grep UNSEG out2/Stanford_S22.unsegmented.vdj.fa
# Testing uncommon and debug options
$ verbose (-v)
2:auditioned sequences
$ segmented.fa (-U)
1:>lcl.FLN1FA001BCDD7.1. .* seed IGH SEG
2:>lcl.FLN1.* VJ .* seed IGH SEG_[+]
$ unsegmented.fa (-u)
4:>lcl.FLN1FA00.* UNSEG
4:>lcl.FLN1.* UNSEG
$ fasta header stops before FA
2:clone-.*-lcl.FLN1-
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