Commit 862f7855 authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

doc/should-vdj.org: JUNCTION/CDR3

parent 25c4d207
......@@ -103,6 +103,15 @@ Mixed TRA/TRD recombinations can be encoded with =[TRA+D]=.
Other special cases, such as translocations involving BCL1 or BCL2, should be written now as comments after a =#= character.
* Encoding the JUNCTION/CDR3 information
JUNCTION or CDR3 information can be optionnaly encoded, using curly braces:
#+BEGIN_EXAMPLE
>TRGV10*02 5/AGAC/3 TRGJP1*01 [TRG] {CAAWRPTGWFKIF}
AAGTCCGTAGAGAAAGAAGACATGGCCGTTTACTACTGTGCTGCGTGGAGACCCACTGGTTGGTTCAAGATATTTGCTGAAGGGACTAAGC
#+END_EXAMPLE
* Ambiguous or alternate designations
On some sequences, several V(D)J designations may be equally acceptable.
......
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