Commit 85060531 authored by Mikaël Salson's avatar Mikaël Salson

segment.h: declare align_against_collection

parent 3fc48ee8
......@@ -340,5 +340,8 @@ class FineSegmenter : public Segmenter
void align_against_collection(string &read, Fasta &rep, int forbidden_rep_id,
bool reverse_ref, bool reverse_both, bool local,
AlignBox *box, Cost segment_cost);
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