Commit 8385fe53 authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

core/windowExtractor.cpp: better display of segmentation status in .affects (-u)

parent d2809177
......@@ -49,14 +49,14 @@ WindowsStorage *WindowExtractor::extract(OnlineFasta *reads, MultiGermline *mult
if (out_unsegmented) {
*out_segmented << seg->getKmerAffectAnalyser()->toString() << endl;
*out_unsegmented << "#>" << reads->getSequence().label << " segmented on " << seg->segmented_germline->code << endl << endl;
*out_unsegmented << "#>" << reads->getSequence().label << " segmented " << segmented_mesg[seg->getSegmentationStatus()] << " on " << seg->segmented_germline->code << endl << endl;
}
}
nb_reads_germline[seg->system]++;
} else if (out_unsegmented) {
*out_unsegmented << "#>" << reads->getSequence().label << " not segmented" << endl << endl;
*out_unsegmented << "#>" << reads->getSequence().label << " not segmented " << segmented_mesg[seg->getSegmentationStatus()] << endl << endl;
}
}
return windowsStorage;
......
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