Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
vidjil
vidjil
Commits
82af4169
Commit
82af4169
authored
Feb 20, 2015
by
Mathieu Giraud
Committed by
Vidjil Team
Feb 20, 2015
Browse files
test: testing fuse.py on three files
parent
52fc4b79
Changes
2
Hide whitespace changes
Inline
Side-by-side
algo/tests/fuse-three-files.should_get
0 → 100644
View file @
82af4169
!LAUNCH: python ../../server/fuse.py ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ; cat fused.vidjil
$ Fuse the three files
2: ListWindows: .1000, 1000, 1000.
$ Check the producer string in output file
1: "producer": "vidjil fuse"
data/results-two-clones.vidjil
0 → 100644
View file @
82af4169
{
"vidjil_json_version" : "2014.10",
"samples" : {
"number" : 1,
"original_names" : [ "/some/file" ] ,
"run_timestamp" : [ "2015-02-19 16:37:06" ] ,
"producer" : [ "vidjil dev 0cf35de (2015-02-17)" ] ,
"log" : [ "Some log" ],
"commandline" : [ "Some commandline" ]
} ,
"reads" : {
"total" : [ 2000 ] ,
"segmented" : [ 1000 ] ,
"germline" : {
"IGH" : [ 950 ]
}
} ,
"clones" : [
{
"id" : "id-1",
"name": "name-1",
"sequence" : "seq-1",
"reads" : [ 800 ] ,
"top" : 1,
"germline" : "IGH"
},
{
"id" : "id-2",
"name" : "name-2",
"sequence": "seq-2",
"reads" : [ 100 ] ,
"top" : 2,
"germline" : "IGH"
}
] ,
"germlines" : {
"custom" : {
"shortcut" : "X",
"3" : [ "/some/IGHV.fa" ],
"4" : [ "/some/IGHD.fa" ],
"5" : [ "/some/IGHJ.fa" ]
}
}
}
Vidjil Team
@vidjilteam
Mentioned in issue
#1439 (closed)
·
Nov 29, 2016
Mentioned in issue
#1439 (closed)
Mentioned in issue #1439
Toggle commit list
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment