use germline.js instead of germline.g in the browser

browser/js/germline_builder.js

@@ -70,7 +70,7 @@ GermlineList.prototype = {
     * */
     fallbackLoad : function () {
         try {
-            this.list = germline_data['systems']
+            this.list = germline
         }
         catch(err){
             console.log({"type": "popup", "msg": "Incorrect browser installation, 'js/germline.js' is not found<br />please run 'make' in 'germline/'"});
@@ -155,24 +155,17 @@ Germline.prototype = {
         if (type=="D") type2="4"
         if (type=="J") type2="3"
         
-        if (typeof this.m.germlineList.list[system] != 'undefined'
-            && typeof this.m.germlineList.list[system]['recombinations'] != 'undefined'){
-            if (typeof this.m.germlineList.list[system]['recombinations'][type2] != 'undefined' ){
-                for (var i=0; i<this.m.germlineList.list[system]['recombinations'][type2].length; i++){
-                    var filename = this.m.germlineList.list[system]['recombinations'][type2][i] 
-                    filename = filename.split('/')[filename.split('/').length-1] //remove path
-                    filename = filename.split('.')[0] //remove file extension 
-                    
-                    if (typeof germline[filename] != 'undefined'){
-                        for (var key in germline[filename]){
-                            this.allele[key] = germline[filename][key]
-                        }
-                    }else{
-                        console.log({"type": "flash", "msg": "warning : this browser version doesn't have the "+filename+" germline file", "priority": 2});
-                    }
-                }
+    
+      this.allele[system+type]={}
+ 
+        for (key in m.germline[system+type]) {
+            this.allele[key]={}
+            this.allele[key]["seq"]=m.germline[system+type][key];
             }
-        }
+    
+
+
+
 
         //reduce germline size (keep only detected genes)
         //and add undetected genes (missing from germline)

browser/js/model.js

@@ -110,6 +110,7 @@ Model.prototype = {
         
         this.tagSelectorList = document.createElement("ul")
         this.tagSelector.appendChild(this.tagSelectorList);
+        this.germline =germline;
         
         document.body.appendChild(this.tagSelector);
         $('.tagSelector').hover(function() {