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Commit 825730c2 authored by Mathieu Giraud's avatar Mathieu Giraud
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tests: a test on a sequence with polyT introduced >7 years ago is now working

This test was already there in 9387e03a :)
parent 4e3a197b
Pipeline #150808 passed with stages
in 38 minutes and 19 seconds
......@@ -17,5 +17,7 @@ $ First sequence, easy segmentation (no error, few deletions at the windows, sma
# Note that a second D (D3-16*01) can be detected (6 common nucleotides, or even 7 with an overlap on the first D)
# This is tested in segment_simul.should-vdj
$ seq1_polyT is the same as seq1 but starts and ends with 10Ts, the recombination is in the middle. start position should not be 0 and end position should not be length-1; See #2138
f1:^>seq1_polyT \\+ VDJ 11 83 88 100 105 150 IGHV5-10-1.0[1-4] 2/CTTC/3 IGHD1-14.01 1/GTTA/5 IGHJ5.01
# seq1_polyT is the same as seq1 but starts and ends with 10Ts, the recombination is in the middle.
$ Sequence with polyT is properly designated
1:^>seq1_polyT \+ VDJ 11 83 88 100 105 150
1:^>seq1_polyT .* IGHV5-10-1.0[1-4] 2/CTTC/3 IGHD1-14.01 1/GTTA/5 IGHJ5.01
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