Commit 80424787 authored by Marc Duez's avatar Marc Duez
Browse files

qunit : .vidjil/analysis test files

parent 59f3e19d
{
"producer": "browser",
"timestamp": "2015-4-30 11:22:40",
"vidjil_json_version": "2014.09",
"samples": {
"timestamp": [
"2014-10-20 13:59:02",
"2014-10-25 14:00:32",
"2014-11-20 14:03:13"
],
"commandline": [
"./vidjil -c clones -g germline/ -r 1 -o ./out0 -z 200 -n 5 Diag.fa ",
"./vidjil -c clones -g germline/ -r 1 -o ./out1 -z 200 -n 5 Fu-1.fa ",
"./vidjil -c clones -g germline/ -r 1 -o ./out2 -z 200 -n 5 Fu-2.fa "
],
"number": 3,
"original_names": [
"Diag.fa",
"Fu-1.fa",
"Fu-2.fa"
],
"log": [
" ==> segmented 362296 reads (38.7%)\n ==> found 11526 40-windows in 335725 segments (35.8%) inside 937164 sequences\n ",
" ==> segmented 407095 reads (56.5%)\n ==> found 35801 40-windows in 396776 segments (55.1%) inside 720531 sequences\n ",
" ==> segmented 448435 reads (48.2%)\n ==> found 43444 40-windows in 418595 segments (45%) inside 929901 sequences\n "
],
"order": [
0,
1,
2
],
"names": [
"",
"",
""
]
},
"clones": [
{
"id": "id1",
"sequence": "aaaaaaaaaaaaaaaaaaaag",
"tag": "0"
}
],
"clusters": [],
"tags": {
"names": {
"0": "clone 1",
"1": "clone 2",
"2": "clone 3",
"3": "standard",
"4": "standard (noise)",
"5": "custom 1",
"6": "custom 2",
"7": "custom 3",
"8": "-/-"
},
"hide": []
},
"normalization": {
"method": "constant",
"A": [],
"B": 0,
"id": -1
}
}
\ No newline at end of file
{
"vidjil_json_version": ["2014.09"],
"reads": {
"segmented": [200,100,200],
"total": [200,100,200],
"germline": {
"TRG": [100,50,100],
"IGH": [100,50,100]
}
},
"samples": {
"timestamp": ["2014-10-20 13:59:02", "2014-10-25 14:00:32", "2014-11-20 14:03:13"],
"commandline": [
"./vidjil -c clones -g germline/ -r 1 -o ./out0 -z 200 -n 5 Diag.fa ",
"./vidjil -c clones -g germline/ -r 1 -o ./out1 -z 200 -n 5 Fu-1.fa ",
"./vidjil -c clones -g germline/ -r 1 -o ./out2 -z 200 -n 5 Fu-2.fa "
],
"number": 3,
"original_names": [
"Diag.fa",
"Fu-1.fa",
"Fu-2.fa"
],
"log": [
" ==> segmented 362296 reads (38.7%)\n ==> found 11526 40-windows in 335725 segments (35.8%) inside 937164 sequences\n ",
" ==> segmented 407095 reads (56.5%)\n ==> found 35801 40-windows in 396776 segments (55.1%) inside 720531 sequences\n ",
" ==> segmented 448435 reads (48.2%)\n ==> found 43444 40-windows in 418595 segments (45%) inside 929901 sequences\n "
]
},
"data": {
"dataTest1" : [45,60,50],
"dataTest2" : [2,1,20]
},
"clones": [
{
"sequence" : "aaaaaaaaaaaaaaaaaaaag",
"name" : "test1",
"id" : "id1",
"reads" : [10,10,15] ,
"top" : 1,
"germline" : "TRG",
"seg" : {
"5" : "TRGV4*01",
"3" : "TRGJ2*03",
"3start" : 6,
"5end" : 5
}
}
]
}
\ No newline at end of file
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