Commit 7f7033a8 authored by Mikaël Salson's avatar Mikaël Salson
Browse files

Merge branch 'feature-a/move-data' into 'dev'

Moving data to algo/test/data

Closes #2611 and #2636

See merge request !73
parents c8afd2d8 277eb0f6
......@@ -24,6 +24,12 @@ test_algo_unit:
only:
- /^feature-a\/.*$/
test_tools_unit:
stage: test_unit
script: make -C tools/tests
only:
- /^feature-a\/.*$/
test_algo_should:
stage: test_functional
script: make should
......
......@@ -139,14 +139,17 @@ cppcheck:
###
data germline browser server: %:
data:
$(MAKE) -C algo/tests/data
germline browser server: %:
$(MAKE) -C $@
clean:
$(MAKE) -C $(VIDJIL_ALGO_SRC) clean
cleanall: clean
$(MAKE) -C data $^
$(MAKE) -C algo/tests/data $^
$(MAKE) -C germline $^
$(MAKE) -C $(VIDJIL_ALGO_SRC) cleanall
$(MAKE) -C server cleanall
......
DATA=Stanford_S22.fasta Stanford_S22_rc.fasta chimera-fake-VJ-trim.g
DATA=Stanford_S22.fasta Stanford_S22.rc.fasta chimera-fake-VJ-trim.g
all: chimera-fake-VJ-trim.g
sh get-sequences
all: $(DATA)
Stanford_S22.fasta:
cd ../../../demo ; sh get-sequences
ln -sv ../../../demo/Stanford_S22*.fasta .
Stanford_S22.rc.fasta: Stanford_S22.fasta
chimera-fake-VJ-trim.g: chimera-fake-VJ.g
sed '/"13s"/ s/$$/, "trim_sequences": 1/' $^ > $@
......
......@@ -2,7 +2,7 @@
"ref": "Fake",
"species": "Fake",
"species_taxon_id": 123,
"path": "../germline/homo-sapiens",
"path": "../../../germline/homo-sapiens",
"systems": {
"Y-Vb/Jg": {
......
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