Commit 7ca4471e authored by Vidjil Team's avatar Vidjil Team Committed by Mathieu Giraud

browser: use "V/5'" and "J/3'" instead of "V" and "J"

The "V" / "J" designations can bring some confusion with incomplete recombinations such as DJ or Dd2-Dd3.
However, we prefer to keep these designations for the majority of cases.
These "V/5'" / "J/3'" are thus some compromise.
parent 4f112951
......@@ -115,8 +115,8 @@
<div id="clusterSelector" class="selector"><div>
<a class="buttonSelector" onclick="m.restoreClusters();">clones merged by user</a>
<a class="buttonSelector" onclick="m.resetClusters();">reset all user clones</a>
<a class="buttonSelector" onclick="m.clusterBy(function(id){return m.clone(id).getGene(5)});">cluster by V </a>
<a class="buttonSelector" onclick="m.clusterBy(function(id){return m.clone(id).getGene(3)});">cluster by J </a>
<a class="buttonSelector" onclick="m.clusterBy(function(id){return m.clone(id).getGene(5)});">cluster by V/5' </a>
<a class="buttonSelector" onclick="m.clusterBy(function(id){return m.clone(id).getGene(3)});">cluster by J/3' </a>
<div id="clusterby_button"> </div>
</div></div>
......@@ -125,8 +125,8 @@
<div class="menu" id="color_menu" onmouseover="showSelector('colorSelector');" > color by
<div class="div-menu-selector"><select class="menu-selector" onchange="m.changeColorMethod(this.value)">
<option value="Tag">tag</option>
<option value="V">V</option>
<option value="J">J</option>
<option value="V">V/5'</option>
<option value="J">J/3'</option>
<option value="N">N</option>
<option value="system" id="color_system_button">locus/germline</option>
<option value="abundance">abundance</option>
......
......@@ -58,8 +58,8 @@ function List(id_list, id_data, model) {
this.sort_option = {
"-" : function () {},
"size" : function(){self.sortListBySize()},
"V" : function(){self.sortListByV()},
"J" : function(){self.sortListByJ()}
"V/5'" : function(){self.sortListByV()},
"J/3'" : function(){self.sortListByJ()}
}
}
......
......@@ -115,16 +115,16 @@ function ScatterPlot(id, model) {
// Plot axis
this.available_axis = {
"gene_v": {
label:"gene V"
label:"V/5' gene"
},
"gene_j": {
label:"gene J"
label:"J/3' gene"
},
"allele_v": {
label:"allele V"
label:"V allele"
},
"allele_j": {
label:"allele J"
label:"J allele"
},
"sequenceLength" : {
label: "clone consensus length",
......
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