Commit 7bde694b authored by Mathieu Giraud's avatar Mathieu Giraud Committed by Vidjil Team
Browse files

germline.cpp, germline.js, germlines.data: Vd-Ja incomplete rearrangements

parent 4943133d
......@@ -175,6 +175,10 @@ void MultiGermline::build_incomplete_set(string path)
germline->new_index("######-######");
germlines.push_back(germline);
// VD-JA
germline = new Germline("VdJa", 'a', path + "/TRDV.fa", "", path + "/TRAJ.fa", -10, 80);
germline->new_index("#####-#####");
germlines.push_back(germline);
// DD2-DD3
germline = new Germline("TRD+", 'd', path + "/TRDD2-01.fa", "", path + "/TRDJ.fa", -10, 20);
......
......@@ -1093,6 +1093,18 @@ germline_data = {
"seed": "10s"
}
},
"VdJa": {
"shortcut": "a",
"color" : "#46abf2",
"description": "Human T-cell receptor, incomplete Vd-Ja rearrangements",
"5": ["TRDV.fa"],
"3": ["TRAJ.fa"],
"parameters": {
"seed": "10s"
}
},
"TRD+": {
"shortcut": "d",
"color" : "#d5a920",
......
......@@ -45,6 +45,18 @@ germline_data = {
"seed": "10s"
}
},
"VdJa": {
"shortcut": "a",
"color" : "#46abf2",
"description": "Human T-cell receptor, incomplete Vd-Ja rearrangements",
"5": ["TRDV.fa"],
"3": ["TRAJ.fa"],
"parameters": {
"seed": "10s"
}
},
"TRD+": {
"shortcut": "d",
"color" : "#d5a920",
......
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