Commit 7b5905dd authored by marc duez's avatar marc duez Committed by Mathieu Giraud
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user.md : complete sequence panel user doc

parent d2dbacf1
......@@ -244,12 +244,12 @@ We invite you to read "[What is the sequence displayed for each clone ?](#what-i
### Select clones to inspect
- Select a single clone : click on it's representative element in any panel. (it can be a plot in the gridpanel, a line in the graph panel or an entry in the list panel)
- Select multiple clone : it's possible to do a rectangular selection of an area of the .scatterplot using a click-and-drag to select multiple clones at the same time.
- Select multiple clone : it's possible to do a rectangular selection of an area of the grid panel using a click-and-drag to select multiple clones at the same time.
- Add a clone to the selection : Ctrl+click
- Remove a clone from the selction : click on the 'X' at the left.
- Remove all selected clone : click on the background of the grid.
The first sequence selected is often used as the reference when further inspecting the
The first clone selected is often used as the reference when further inspecting the sequences
## Using the sequence panel tools
......@@ -264,10 +264,22 @@ provide an alignement of the sequences, the sequence of the first clone in the l
by default
- `-` is a gap.
- `*` is a match .
- `*` is a match.
- a single line under a character is a mismatch.
- a double line under a character is a mismatch that does not impact the resulting amino acid sequence.
- `#` in an Amino acid sequence is
- `#` in an Amino acid sequence indicate a frameshift in the junction.
look at the available options available in the sub-menu "[Alignement Settings](### Alignement settings)" below to see how to customize.
### Data Colums
Every clone can have a lot of different available data depending on the analysis software used for the processing, use this menu to select which data you want to be displayed alongside the clone name.
### Alignement settings
Customize the alignement display
- highlight mismatch
- hide match
- switch between Amino Acid and nucleotidic sequence
### External Analysis: Further sequence analysis with external software
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