Commit 79c15f56 authored by Mathieu Giraud's avatar Mathieu Giraud

core/representative.{h,cpp}: remove unused setters/getters

parent 976e6dd8
......@@ -16,24 +16,6 @@ Sequence RepresentativeComputer::getRepresentative() const{
return representative;
}
string RepresentativeComputer::getRequiredSequence() const {
return required;
}
list<Sequence>& RepresentativeComputer::getSequenceList() const{
return sequences;
}
size_t RepresentativeComputer::getMinCover() const {
return min_cover;
}
float RepresentativeComputer::getPercentCoverage() const {
return percent_cover;
}
bool RepresentativeComputer::getRevcomp() const {
return revcomp;
}
bool RepresentativeComputer::hasRepresentative() const{
return is_computed;
}
......@@ -71,14 +53,6 @@ string KmerRepresentativeComputer::getSeed() const{
return seed;
}
void KmerRepresentativeComputer::setSeed(string seed) {
this->seed = seed;
}
int KmerRepresentativeComputer::getStabilityLimit() const {
return stability_limit;
}
void KmerRepresentativeComputer::setStabilityLimit(int limit) {
stability_limit = limit;
}
......
......@@ -34,21 +34,6 @@ public:
*/
Sequence getRepresentative() const;
/**
* @return the sequence that must be contained in the representative sequence
* ie. getRepresentative().find(getRequiredSequence()) != string::npos
*/
string getRequiredSequence() const;
/**
* @return the input sequences we are working on
*/
list<Sequence>& getSequenceList() const;
size_t getMinCover() const;
float getPercentCoverage() const;
bool getRevcomp() const;
/**
* @return true iff compute() has been called and the criteria have been met.
*/
......@@ -111,13 +96,6 @@ public:
// Getters, setters
string getSeed() const;
/**
* Sets the length of the k-mer used for computing the representative
*/
void setSeed(string seed);
int getStabilityLimit() const;
/**
* @param limit: maximal number of iterations to be performed before reaching
* stability. If after limit number of iterations, the length
......
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