Commit 7829f8bd authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

vidjil.cpp: outputs in the .vidjil file the representative in the good strand

Fixes a bug introduced in 90b8bb4e
parent dd1e17ed
......@@ -1339,7 +1339,7 @@ int main (int argc, char **argv)
json json_clone;
json_clone["sequence"] = representative.sequence;
json_clone["sequence"] = kseg->getSequence().sequence;
json_clone["_coverage"] = { repComp.getCoverage() };
json_clone["_average_read_length"] = { windowsStorage->getAverageLength(it->first) };
json_clone["_coverage_info"] = {repComp.getCoverageInfo()};
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