Commit 78116fd8 authored by Mathieu Giraud's avatar Mathieu Giraud

tests: update

parent ee903456
......@@ -7,7 +7,7 @@ $ Segmented on IGH+
1: "germline": "IGH\+"
$ Correct (non-)recombination
1: "name": "IGHD7-27.01 0/[ACGT]{92}/0 IGHJ1.01"
1: "name": "IGHD7-27.01 0/92/0 IGHJ1.01"
$ Warning
1: "code": "W61"
......
!LAUNCH: $VIDJIL_DIR/$EXEC -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH -r 1 $VIDJIL_DATA/large_N.fa
$ Find a huge insertion in the segmentation
1:>clone-001.*/[ACGT]{100}
1:>clone-001.*/167/
>IGHV3-11*01 1/CCCCCGAGAGCCGAGGGGGGGAGAGATCCCGGGGGG/6 IGHD6-6*01 1/TCCAGCTCGTCCGGGGG/12 IGHJ4*02 [IGH]
>IGHV3-11*01 1/36/6 IGHD6-6*01 1/TCCAGCTCGTCCGGGGG/12 IGHJ4*02 [IGH]
GGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGCCCCCGAGAGCCGAGGGGGGGAGAGATCCCGGGGGGAGCAGCTCGTCTCCAGCTCGTCCGGGGGACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGT
>IGHV3-9*01 11/A/5 IGHD2-2*02 1/GGAA/4 IGHD3-9*01 7//10 IGHJ6*03 [IGH]
......
......@@ -14,7 +14,7 @@ GCCCTATAGTGAGTCGTATTA
#target 0796TH
#IGHV4-59*01: ...gtgtattactgtgc gAgagA
>IGHV4-59*01 (6/CGTGAGGGGGAAGGGCGAGAGGGACCCTAGGTTAAAGGGCTT/3, 1/GGGGAAGGGCGAGAGGGACCCTAGGTTAAAGGGCTT/3) IGHD6-6*01 (3/0/7, 2/0/8) IGHJ4*02 [IGH]
>IGHV4-59*01 (6/42/3, 1/36/3) IGHD6-6*01 (3/0/7, 2/0/8) IGHJ4*02 [IGH]
AGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGC
TCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATC
TATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAG
......
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