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vidjil
vidjil
Commits
77e91ad1
Commit
77e91ad1
authored
Mar 21, 2019
by
Mikaël Salson
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algo/tests: Add test on min_cover_representative
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algo/tests/data/representative-few-reads.fa
algo/tests/data/representative-few-reads.fa
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algo/tests/should-get-tests/representative-min-cover.should-get
...ests/should-get-tests/representative-min-cover.should-get
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algo/tests/data/representative-few-reads.fa
0 → 100644
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77e91ad1
# seq1, 2, 3, 4 are identical
# One insertion has been added both in seq4 and seq5 (different ones) in uppercase.
>seq1
ggctggagtgggtttcatacattagtagtaatagtggtgccatatactacgcagactctgtgaagggccgattcaccatc
tccagaaacaatgccaaggactcactgtatctgcaaatgaacagcctgagagccgaggacacggctgtgtattactgtgc
gagagcgatcccccggtattactatgatactagtggcccaaacgactactggggccagggaaccctggtcaccgtctcct
cag
>seq2
ggctggagtgggtttcatacattagtagtaatagtggtgccatatactacgcagactctgtgaagggccgattcaccatc
tccagaaacaatgccaaggactcactgtatctgcaaatgaacagcctgagagccgaggacacggctgtgtattactgtgc
gagagcgatcccccggtattactatgatactagtggcccaaacgactactggggccagggaaccctggtcaccgtctcct
cag
>seq3
ggctggagtgggtttcatacattagtagtaatagtggtgccatatactacgcagactctgtgaagggccgattcaccatc
tccagaaacaatgccaaggactcactgtatctgcaaatgaacagcctgagagccgaggacacggctgtgtattactgtgc
gagagcgatcccccggtattactatgatactagtggcccaaacgactactggggccagggaaccctggtcaccgtctcct
cag
>seq4
ggctggagtgggtttcatacattagtagtaatagtggtgccatatactacgcagactctgtgaagggccgattcaccatc
tccagaaacaatgccaaggactcactgtatctgcaaatgAaacagcctgagagccgaggacacggctgtgtattactgtgc
gagagcgatcccccggtattactatgatactagtggcccaaacgactactggggccagggaaccctggtcaccgtctcct
cag
>seq5
ggctggagtgggtttcatacattagtagtaatagtggtgccatatactacgcagactctgtgaagggccgattcaccatc
tccagaaacaatgccaaggactcactgtatctgcaaatgaacagcctgagagAccgaggacacggctgtgtattactgtgc
gagagcgatcccccggtattactatgatactagtggcccaaacgactactggggccagggaaccctggtcaccgtctcct
cag
algo/tests/should-get-tests/representative-min-cover.should-get
0 → 100644
View file @
77e91ad1
!LAUNCH: $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS -r 5 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/representative-few-reads.fa
$ Consensus sequence should span on the whole sequence
1: clone.*99% of 243
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