tests: update tests for -w 50

algo/tests/clones_lec.should_get

 !LAUNCH: ../../vidjil -G ../../germline/TRG -c clones ../../data/segment_lec.fa
 
-$ Extract 40bp windows (TRG)
-1:found . 40-windows
+$ Extract 50bp windows (TRG)
+1:found . 50-windows
 
 $ Find the good number of windows
 1: found 2 .* in 4 segments .* inside 7 sequences

algo/tests/revcomp.should_get

@@ -7,5 +7,5 @@ $ Same number of 'V' affectations in both reads
 2:143
 
 $ Only one window
-1:==> found 1 60-window
+1:==> found 1 ..-window
 

algo/tests/stanford-X100-sampled.should_get

@@ -4,4 +4,4 @@ $ Skip the good number of reads
 1:Processing every 131th read
 
 $ Analyze the good number of reads
-1: found 100 60-windows in 100 segments .100.. inside 100 sequences
+1: found 100 ..-windows in 100 segments .100.. inside 100 sequences

algo/tests/stanford-data.should_get

-!LAUNCH: ../../vidjil -G ../../germline/IGH -r 5 -b data  ../../data/Stanford_S22.fasta ; cat out/data.vidjil | python ../../tools/format_json.py -1
+!LAUNCH: ../../vidjil -G ../../germline/IGH -w 60 -r 5 -b data  ../../data/Stanford_S22.fasta ; cat out/data.vidjil | python ../../tools/format_json.py -1
 
 $ Number of reads
 e1:"total": [13153]

algo/tests/stanford-debug.should_get

-!LAUNCH: ../../vidjil -r 5 -o out2 -u -U -v -G ../../germline/IGH ../../data/Stanford_S22.fasta ; tail out2/Stanford_S22.segmented.vdj.fa ; grep UNSEG out2/Stanford_S22.unsegmented.vdj.fa
+!LAUNCH: ../../vidjil -w 60 -r 5 -o out2 -u -U -v -G ../../germline/IGH ../../data/Stanford_S22.fasta ; tail out2/Stanford_S22.segmented.vdj.fa ; grep UNSEG out2/Stanford_S22.unsegmented.vdj.fa
 # Testing uncommon and debug options 
 
 $ verbose (-v)

algo/tests/stanford-fuse.should_get

-!LAUNCH: ../../vidjil -G ../../germline/IGH ../../data/Stanford_S22.fasta ; python ../../tools/fuse.py out/Stanford_S22.vidjil out/Stanford_S22.vidjil -o out/fused.data ; cat out/fused.data | python ../../tools/format_json.py -1
+!LAUNCH: ../../vidjil -w 60 -G ../../germline/IGH ../../data/Stanford_S22.fasta ; python ../../tools/fuse.py out/Stanford_S22.vidjil out/Stanford_S22.vidjil -o out/fused.data ; cat out/fused.data | python ../../tools/format_json.py -1
 
 $ Points list
 e1:"original_names": ["../../data/Stanford_S22.fasta", "../../data/Stanford_S22.fasta"]

algo/tests/stanford-k14.should_get

@@ -11,5 +11,4 @@ $ Parses germline/IGHJ.fa
 1: 701 bp in  13 sequences
 
 $ Find the good number of windows in Stanford S22 (contiguous seed 14)
-1: found 10921 60-windows in 13114 segments
-
+1: found 10743 50-windows in 13114 segments

algo/tests/stanford-labels.should_get

-!LAUNCH: ../../vidjil -G ../../germline/IGH -r 5 -l ../../data/Stanford_S22.label ../../data/Stanford_S22.fasta 
+!LAUNCH: ../../vidjil -w 60 -G ../../germline/IGH -r 5 -l ../../data/Stanford_S22.label ../../data/Stanford_S22.fasta
 
 $ Keep the good number of windows, including one window labeled in Stanford_S22.label
 1: keep 3 windows

algo/tests/stanford-x100-first.should_get

 !LAUNCH: ../../vidjil -x 100 -G ../../germline/IGH ../../data/Stanford_S22.fasta
 
 $ Analyze the good number of sequences in Stanford S22 
-1: found 98 60-windows in 99 segments .99.. inside 100 sequences
+1: found 98 ..-windows in 99 segments .99.. inside 100 sequences

algo/tests/stanford.should_get

@@ -16,5 +16,5 @@ $ Find approximately the good number of sequences for e-value computation
 1: approx. 131.. sequences
 
 $ Find the good number of windows in Stanford S22
-1: found 10935 60-windows in 13138 segments
+1: found 10732 50-windows in 13138 segments
 

algo/tests/vidjil_revcomp_s22.should_get

@@ -13,5 +13,8 @@ $ Keep the same number of windows
 0:==> keep 
 
 $ Same segmentation for the main clone
-2:clone.001.*0 114 118 131 137 180
+2:clone.001.*0 31 38 57 66 111
+
+$ Same representative for the main clone
+2:clone.001.* 112 bp .45. of 247 bp.