Commit 72c6ab69 authored by Mikaël Salson's avatar Mikaël Salson

ncbi.py, split-from-imgt.py: Remove useless parameter

parent 2a7cd0c6
Pipeline #32634 passed with stages
in 49 seconds
...@@ -41,7 +41,7 @@ def ncbi_and_write(ncbi, additional_header, outs): ...@@ -41,7 +41,7 @@ def ncbi_and_write(ncbi, additional_header, outs):
for out in outs: for out in outs:
out.write(fasta_with_id) out.write(fasta_with_id)
def get_updownstream_sequences(gene, other_gene_name, start, end, additional_length): def get_updownstream_sequences(gene, start, end, additional_length):
''' '''
Only returns upstream or downstream raw sequences Only returns upstream or downstream raw sequences
......
...@@ -132,7 +132,7 @@ def retrieve_genes(f, genes, tag, additional_length, gene_list): ...@@ -132,7 +132,7 @@ def retrieve_genes(f, genes, tag, additional_length, gene_list):
gene_id = None gene_id = None
# extract from gene # extract from gene
gene_data = ncbi.get_gene_sequence(gene, coord['imgt_data'] + tag, coord['from'], coord['to'], allele_additional_length) gene_data = ncbi.get_gene_sequence(gene, coord['from'], coord['to'], allele_additional_length)
if gene_id: if gene_id:
up_down = ncbi.get_updownstream_sequences(target, coord['imgt_data'] + tag, start, end, additional_length) up_down = ncbi.get_updownstream_sequences(target, coord['imgt_data'] + tag, start, end, additional_length)
......
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