Mise à jour terminée. Pour connaître les apports de la version 13.8.4 par rapport à notre ancienne version vous pouvez lire les "Release Notes" suivantes :
https://about.gitlab.com/releases/2021/02/11/security-release-gitlab-13-8-4-released/
https://about.gitlab.com/releases/2021/02/05/gitlab-13-8-3-released/

Commit 715abb4a authored by Mathieu Giraud's avatar Mathieu Giraud

imgt-to-vdj.py: MiXCR and IMGT/VQUEST, AA JUNCTION

parent 42c3e787
......@@ -37,6 +37,8 @@ def parse_gene_and_allele_to_vdj(s):
def N_to_vdj(s):
return '/%s/' % s
def CDR3_to_vdj(s):
return '{%s}' % s if s else ''
class Result():
'''Stores a tabulated result'''
......@@ -83,6 +85,9 @@ class MiXCR_Result(Result):
s += ' '
s += self['Best J hit']
s += ' '
s += CDR3_to_vdj(self['AA. Seq. CDR3'])
return s
......@@ -104,6 +109,10 @@ class IMGT_VQUEST_Result(Result):
s += parse_gene_and_allele_to_vdj(self['D-GENE and allele'])
s += ' '
s += parse_gene_and_allele_to_vdj(self['J-GENE and allele'])
s += ' '
s += CDR3_to_vdj(self['AA JUNCTION'])
return s
......
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