Commit 7139afc6 authored by Mikaël Salson's avatar Mikaël Salson

format-analysis.org: Good example with positions starting at 1

parent 8bcd8aa6
...@@ -55,7 +55,7 @@ Note that other elements could be added by some program (such as =tag= or =clust ...@@ -55,7 +55,7 @@ Note that other elements could be added by some program (such as =tag= or =clust
"top": 1, "top": 1,
"seg": "seg":
{ {
"5": "TRGV5*01", "5start": 0, "5end": 86, "5": "TRGV5*01", "5start": 1, "5end": 86,
"3": "TRGJ1*02", "3start": 89, "3end": 118, "3": "TRGJ1*02", "3start": 89, "3end": 118,
"cdr3": { "start": 77, "stop": 104, "seq": "gccacctgggccttattataagaaactc" } "cdr3": { "start": 77, "stop": 104, "seq": "gccacctgggccttattataagaaactc" }
} }
...@@ -102,7 +102,7 @@ and 'IMGT clonotype (AA) or (nt)' could also be used by some programs). ...@@ -102,7 +102,7 @@ and 'IMGT clonotype (AA) or (nt)' could also be used by some programs).
"top": 1, "top": 1,
"seg": "seg":
{ {
"5": "TRGV5*01", "5start": 0, "5end": 86, "5": "TRGV5*01", "5start": 1, "5end": 86,
"3": "TRGJ1*02", "3start": 89, "3end": 118 "3": "TRGJ1*02", "3start": 89, "3end": 118
} }
}, },
...@@ -118,7 +118,12 @@ and 'IMGT clonotype (AA) or (nt)' could also be used by some programs). ...@@ -118,7 +118,12 @@ and 'IMGT clonotype (AA) or (nt)' could also be used by some programs).
"sequence": "ATACAGA", "sequence": "ATACAGA",
"reads": [ 521, 42 ], "reads": [ 521, 42 ],
"germline": "TRG", "germline": "TRG",
"top": 3 "top": 3,
"seg":
{
"5start": 1, "5end": 100,
"3start": 101, "3end": 200
}
} }
] ]
} }
......
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