Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
vidjil
vidjil
Commits
7139afc6
Commit
7139afc6
authored
Mar 14, 2016
by
Mikaël Salson
Browse files
format-analysis.org: Good example with positions starting at 1
parent
8bcd8aa6
Changes
1
Hide whitespace changes
Inline
Side-by-side
doc/format-analysis.org
View file @
7139afc6
...
...
@@ -55,7 +55,7 @@ Note that other elements could be added by some program (such as =tag= or =clust
"top": 1,
"seg":
{
"5": "TRGV5*01", "5start":
0
, "5end": 86,
"5": "TRGV5*01", "5start":
1
, "5end": 86,
"3": "TRGJ1*02", "3start": 89, "3end": 118,
"cdr3": { "start": 77, "stop": 104, "seq": "gccacctgggccttattataagaaactc" }
}
...
...
@@ -102,7 +102,7 @@ and 'IMGT clonotype (AA) or (nt)' could also be used by some programs).
"top": 1,
"seg":
{
"5": "TRGV5*01", "5start":
0
, "5end": 86,
"5": "TRGV5*01", "5start":
1
, "5end": 86,
"3": "TRGJ1*02", "3start": 89, "3end": 118
}
},
...
...
@@ -118,7 +118,12 @@ and 'IMGT clonotype (AA) or (nt)' could also be used by some programs).
"sequence": "ATACAGA",
"reads": [ 521, 42 ],
"germline": "TRG",
"top": 3
"top": 3,
"seg":
{
"5start": 1, "5end": 100,
"3start": 101, "3end": 200
}
}
]
}
...
...
Mikaël Salson
@mikael-s
mentioned in commit
c4b7c8ba
·
Jul 22, 2019
mentioned in commit
c4b7c8ba
mentioned in commit c4b7c8ba5ec9b4e04ad5bc1b922923c64f1a33f1
Toggle commit list
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment