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vidjil
vidjil
Commits
70e77500
Commit
70e77500
authored
Jan 31, 2017
by
Mathieu Giraud
Browse files
split-from-imgt.py, get-germline: put human germlines in 'homo-sapiens'
See
#2132
.
parent
d1a2952d
Changes
2
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germline/get-germline
View file @
70e77500
...
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@@ -5,5 +5,5 @@ wget -O - http://www.imgt.org/download/GENE-DB/IMGTGENEDB-ReferenceSequences.fas
wget
-O
IMGT_RELEASE http://www.imgt.org/download/GENE-DB/RELEASE
wget
-N
http://rbx.vidjil.org/browser/germline/IGK-INTRON.fa
wget
-N
http://rbx.vidjil.org/browser/germline/IGK-KDE.fa
wget
-N
-P
homo-sapiens
http://rbx.vidjil.org/browser/germline/IGK-INTRON.fa
wget
-N
-P
homo-sapiens
http://rbx.vidjil.org/browser/germline/IGK-KDE.fa
germline/split-from-imgt.py
View file @
70e77500
...
...
@@ -178,7 +178,7 @@ UPSTREAM_REGIONS=['IGHD', 'TRDD', 'TRBD', 'TRDD2']
# Be careful, 'IGHD' regex for UPSTREAM_REGIONS also matches IGHD*0? constant regions.
SPECIES
=
{
"Homo sapiens"
:
'
.
/'
,
"Homo sapiens"
:
'
homo-sapiens
/'
,
"Mus musculus"
:
'mus-musculus/'
,
"Rattus norvegicus"
:
'rattus-norvegicus/'
,
"Rattus norvegicus_BN/SsNHsdMCW"
:
'rattus-norvegicus/'
,
...
...
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