@@ -510,7 +510,7 @@ int main (int argc, char **argv)
app.add_flag("--cluster-load-matrix",load_comp,"load comparative matrix for clustering")->group(group)->level();
stringforced_edges="";
app.add_option("--cluster-forced-edges",forced_edges,"manual clustering -- a file used to force some specific edges")->group(group)->level()->set_type_name("FILE");
app.add_option("--cluster-forced-edges",forced_edges,"manual clustering -- a file used to force some specific edges")->group(group)->level()->type_name("FILE");
Costcluster_cost=DEFAULT_CLUSTER_COST;
app.add_option("--cluster-cost",
...
...
@@ -519,7 +519,7 @@ int main (int argc, char **argv)
returntrue;
},
"use custom Cost for automatic clustering : format \"match, subst, indels, del_end, homo\" (default "+string_of_cost(DEFAULT_CLUSTER_COST)+")")