Commit 6ec0f991 authored by Marc Duez's avatar Marc Duez

vidjil.cpp : debug germline name

parent f0eb9cba
......@@ -364,6 +364,8 @@ int main (int argc, char **argv)
f_rep_V = (germline_system + "V.fa").c_str() ;
f_rep_D = (germline_system + "D.fa").c_str() ;
f_rep_J = (germline_system + "J.fa").c_str() ;
if (germline_system.find_last_of("/\\") != string::npos)
germline_system.erase(0, germline_system.find_last_of("/\\")+1);
// TODO: if VDJ, set segment_D // NO, bad idea, depends on naming convention
break;
......
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