Commit 6eb6527f authored by Mathieu Giraud's avatar Mathieu Giraud

core/segment.cpp: fix

Fix aaf2e250.
parent bf570c13
Pipeline #32764 failed with stages
in 4 seconds
......@@ -1136,9 +1136,12 @@ bool FineSegmenter::FineSegmentD(Germline *germline,
string str = seq.substr(l, r-l);
// the threshold is lowered by the number of independent tests made
double standardised_threshold_evalue = evalue_threshold / multiplier;
// Align
align_against_collection(str, germline->rep_4, forbidden_id, false, false, true,
box_DD, segment_cost, false, evalue_standardised_threshold_evalue);
box_DD, segment_cost, false, standardised_threshold_evalue);
box_DD->start += l ;
box_DD->end += l ;
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