tests: add tests to check both old (1-based) and new (0-based) 5/4/3 fields

browser/test/QUnit/testFiles/clone_test.js

@@ -11,7 +11,7 @@
             "4" : "IGHD2*03",
             '_evalue': 1e-2,
             "3start" : 15,
-            "5" : {'start': 1, 'end': 5},
+            "5" : {'start': 1, 'end': 5}, // 0-based (old format, with 'end')
             "cdr3": {
                 "start": 11,
                 "stop": 16,
@@ -34,6 +34,10 @@
         "reads" : [10,10,15,15] ,
         "top" : 2,
         "germline" : "TRG",
+
+        "seg" : {
+            "5" : {'start': 2, 'stop': 6}, // 1-based (current format)
+        }
     }
     
     var json_clone3 = {

browser/test/QUnit/testFiles/model_test.js

@@ -21,6 +21,9 @@ test("model: convert", function () {
 
     deepEqual(m.convertSeg(json_clone3.seg), {"5": {"stop": 5}, "4": {"name": "IGHD2*03"}, "3": {"name": "IGHV4*01", "start": 15}, "junction": {"productive": false, "start": 2, "stop": 13}}, "convertSeg: Ok");
     deepEqual(m.convertSeg(seg), {"3": {"name": "J", "start": 3}, "4": {"name": "D", "start": 1, "stop": 2}, "5": {"name": "V", "stop": 0}, "score": {"val": 42}, "cdr3": {"start": 0, "stop": 3}, "foo": {"start": 17, "stop": 42}}, "convertSeg: Ok");
+
+    deepEqual(m.convertSeg(json_clone1.seg)['5'], {"start": 1, "stop": 5}, "convertSeg on old 0-based 5/4/3 fields");
+    deepEqual(m.convertSeg(json_clone2.seg)['5'], {"start": 1, "stop": 5}, "convertSeg on current 1-based fields");
 });
 
 test("model : load", function() {