core/windowExtractor.cpp: display tested germline together with the case of unsegmentation

Now KmerSegmenter.segmented_germline always contains the last tested germline, even
when it is not actually segmented.

algo/core/segment.cpp

@@ -176,6 +176,7 @@ KmerSegmenter::KmerSegmenter(Sequence seq, MultiGermline *multigermline)
   for (list<Germline*>::const_iterator it = multigermline->germlines.begin(); it != multigermline->germlines.end(); ++it)
     {
       Germline *germline = *it ;
+      segmented_germline = germline;
 
   int s = (size_t)germline->index->getS() ;
   int length = sequence.length() ;
@@ -221,7 +222,6 @@ KmerSegmenter::KmerSegmenter(Sequence seq, MultiGermline *multigermline)
   if (segmented)
     {
       // Yes, it is segmented
-      segmented_germline = germline;
       germline->stats.insert(length);
 
       reversed = (strand == -1); 

algo/core/windowExtractor.cpp

@@ -46,7 +46,7 @@ WindowsStorage *WindowExtractor::extract(OnlineFasta *reads, MultiGermline *mult
       
     } else if (out_unsegmented) {
       *out_unsegmented << reads->getSequence();
-      *out_unsegmented << "#" << segmented_mesg[seg.getSegmentationStatus()] << endl;
+      *out_unsegmented << "#" << segmented_mesg[seg.getSegmentationStatus()] << " " << seg.segmented_germline->code << endl;
       if (seg.getSegmentationStatus() != UNSEG_TOO_SHORT) {
         *out_unsegmented << seg.getKmerAffectAnalyser()->toString() << endl;
       }