Commit 6a7fab76 authored by Cyprien Borée's avatar Cyprien Borée Committed by Mikaël Salson

add parameter for filterBioReader function call

Since a new parameter has been added to filterBioReader (representing the
filter specifity) it has to be transmitted when calling the function. Otherwise
the filter will do the filter on "NO_LIMIT_VALUE".

For more informations see #3268
parent f382200d
......@@ -1050,7 +1050,7 @@ FineSegmenter::FineSegmenter(Sequence seq, Germline *germline, Cost segment_c,
/* Regular 53 Segmentation */
if(kmer_threshold != NO_LIMIT_VALUE){
BioReader filtered = filterBioReaderWithACAutomaton(germline->automaton_5, germline->rep_5, sequence_or_rc);
BioReader filtered = filterBioReaderWithACAutomaton(germline->automaton_5, germline->rep_5, sequence_or_rc, kmer_threshold);
align_against_collection(sequence_or_rc, filtered, NO_FORBIDDEN_ID, reverse_V, reverse_V, false,
box_V, segment_cost);
}else{
......
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