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vidjil
vidjil
Commits
6935e2ae
Commit
6935e2ae
authored
Oct 20, 2014
by
Mathieu Giraud
Browse files
tests: update should_get tests to .data 2014.10 format
parent
adad65ef
Changes
2
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algo/tests/stanford-data.should_get
View file @
6935e2ae
!LAUNCH: ../../vidjil -G ../../germline/IGH -r 5 -d ../../data/Stanford_S22.fasta ; cat out/vidjil.data | sh format-json.sh
$ Number of reads
1:"
reads_
total" : [ 13153 ] ,
1:"total" : [ 13153 ] ,
$ Number of segmented reads
1:"
reads_
segmented" : [ 13139 ]
,
1:"segmented" :
[ 13139 ]
$ Most abundant window
1:"
window
" : "CCACCTATTACTGTACCCGGGAGGAACAATATAGCAGCTGGTACTTTGACTTCTGGGGCC", "
size
" : [ 8 ]
1:"
id
" : "CCACCTATTACTGTACCCGGGAGGAACAATATAGCAGCTGGTACTTTGACTTCTGGGGCC", "
reads
" : [ 8 ]
algo/tests/stanford-fuse.should_get
View file @
6935e2ae
...
...
@@ -4,7 +4,7 @@ $ Points list
f1:"point": [ "", "" ]
$ Most abundant window, twice, fused
f1:"
window
": "CCACCTATTACTGTACCCGGGAGGAACAATATAGCAGCTGGTACTTTGACTTCTGGGGCC",
"id": .*, "size
": [ 8, 8 ]
f1:"
id
": "CCACCTATTACTGTACCCGGGAGGAACAATATAGCAGCTGGTACTTTGACTTCTGGGGCC",
.*"reads
": [ 8, 8 ]
# Fails since 49046ca6b97, no more 'others'
$ Windows that are not in the top 50
...
...
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