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vidjil
vidjil
Commits
666c0d3e
Commit
666c0d3e
authored
Jun 14, 2018
by
Mathieu Giraud
Committed by
Mikaël Salson
Jun 14, 2018
Browse files
js/clone.js: getShortName(), compress also IKZF1 and ERG 'locus'
parent
62837a33
Changes
1
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browser/js/clone.js
View file @
666c0d3e
...
...
@@ -140,8 +140,8 @@ Clone.prototype = {
REGEX_N
:
/^
(
-
?\d
*
)\/([
ACGT
]
*
)\/(
-
?\d
*
)
$/
,
// 6/ACCAT/
REGEX_N_SIZE
:
/^
(
-
?\d
*
)\/(\d
*
)\/(
-
?\d
*
)
$/
,
// 6/5/
REGEX_GENE
:
/
(
IGH|IGK|IGL|TRA|TRB|TRG|TRD
)([\w
-*
]
*
)
$/
,
// IGHV3-11*03
REGEX_GENE_IGNORE_ALLELE
:
/
(
IGH|IGK|IGL|TRA|TRB|TRG|TRD
)([\w
-
]
*
)([\w
-*
]
*
)
$/
,
// IGHV3-11*03 (ignore *03)
REGEX_GENE
:
/
(
IGH|IGK|IGL|TRA|TRB|TRG|TRD
|IKZF1-|ERG-
)([\w
-*
]
*
)
$/
,
// IGHV3-11*03
REGEX_GENE_IGNORE_ALLELE
:
/
(
IGH|IGK|IGL|TRA|TRB|TRG|TRD
|IKZF1-|ERG-
)([\w
-
]
*
)([\w
-*
]
*
)
$/
,
// IGHV3-11*03 (ignore *03)
getAverageReadLength
:
function
(
time
)
{
if
(
this
.
_average_read_length
==
'
undefined
'
)
...
...
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