Merge branch 'feature-ts/4213-le-top-de-fuse-n-est-pas-bon' into 'dev'

Resolve "Le top de fuse n'est pas bon"

Closes #4213

See merge request !623

tools/fuse.py

@@ -724,7 +724,7 @@ class ListWindows(VidjilJson):
         others = OtherWindows(nb_points)
 
         for clone in self:
-            if (int(clone.d["top"]) < limit or limit == 0) :
+            if (int(clone.d["top"]) <= limit or limit == 0) :
                 w.append(clone)
             #else:
                 #others += clone

tools/tests/should-get-tests/fuse-doc.should-get

@@ -5,3 +5,15 @@ $ Fuse the two examples (three samples, two identical)
 
 $ IGH and TRG germlines
 :"germline": {"TRG": \[250000, 250000, 300000\], "IGH": \[85662, 85662, 10124\]}
+
+
+### Test the number of clones getted
+!LAUNCH: python ../../fuse.py ../../../doc/analysis-example2.vidjil ; cat fused.vidjil
+
+$ Default top threshold is set to 50, so each clone should be present
+4:"sequence"
+
+!LAUNCH: python ../../fuse.py --top 3 ../../../doc/analysis-example2.vidjil ; cat fused.vidjil
+$ Change top to 3 (for 4 clones present)
+3:"sequence"
+