Commit 63ce9c60 authored by Mikaël Salson's avatar Mikaël Salson
Browse files

segmenter.py: Vidjil options for a full analysis

-2 : unexpected recombinations
-3: compute CDR3
parent 4013bc62
......@@ -42,7 +42,7 @@ def index():
germline_folder = defs.DIR_VIDJIL + '/germline/'
## config de vidjil
config = '-c segment -g germline'
config = '-c segment -i -2 -3 -g germline'
config = config.replace( ' germline' ,germline_folder)
## commande complete
......
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