Commit 623347e8 authored by Mikaël Salson's avatar Mikaël Salson Committed by Mathieu Giraud
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test/ambiguous_representative: Increase sequence complexity to avoid random matches

--A--T--A--A--C--C--C--T--T--T was matching twice in sequence 2 (shifted by two positions).
The unexpected match covered the position with the difference.

Modifying the example sounds like cheating but the sequence has
very low complexity which makes a not-so-easy test case.
parent 7b3cb057
...@@ -10,7 +10,7 @@ $ Representative computation ...@@ -10,7 +10,7 @@ $ Representative computation
1:>clone-001--custom--0000004--100%--seq.-\\[8,49\\] 1:>clone-001--custom--0000004--100%--seq.-\\[8,49\\]
$ Representative sequence $ Representative sequence
1: TATATGTATANCACCCCCCCCCTTTTTTTCTNGCGCGAGCGA 1: TATTTGTATANCACCCCCCCCCTTTTTTTCTNGCGCGAGCGA
$ Representative sequence has the good length, it does not extend towards noisy sequences $ Representative sequence has the good length, it does not extend towards noisy sequences
2: 42 bp .... of 58.. bp. 2: 42 bp .... of 58.. bp.
# (see toy_{V,J}.fa) # (see toy_{V,J}.fa)
# ----------nVVVVVV--------JJJJJJn--------- # ----------nVVVVVV--------JJJJJJn---------
# TATATGTATAnCACCCCCCCCCTTTTTTTCTnGCGCGAGCGA # TATTTGTATAnCACCCCCCCCCTTTTTTTCTnGCGCGAGCGA
>seq1 >seq1
ctctctcaTATATGTATAtCACCCCCCCCCTTTTTTTCTcGCGCGAGCGActctctct ctctctcaTATTTGTATAtCACCCCCCCCCTTTTTTTCTcGCGCGAGCGActctctct
>seq2 >seq2
gtgtgtgtTATATGTATAaCACCCCCCCCCTTTTTTTCTgGCGCGAGCGAgtgtgtgt gtgtgtgtTATTTGTATAaCACCCCCCCCCTTTTTTTCTgGCGCGAGCGAgtgtgtgt
>seq3 >seq3
ttattatgTATATGTATAcCACCCCCCCCCTTTTTTTCTaGCGCGAGCGAttattatt ttattatgTATTTGTATAcCACCCCCCCCCTTTTTTTCTaGCGCGAGCGAttattatt
>seq4 >seq4
acacacacTATATGTATAgCACCCCCCCCCTTTTTTTCTtGCGCGAGCGAacacacac acacacacTATTTGTATAgCACCCCCCCCCTTTTTTTCTtGCGCGAGCGAacacacac
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