core/segment.cpp: output CDR3 status in json

5a387852 · Mathieu Giraud · 3a6c438e · 5a387852
Commit 5a387852 authored Feb 28, 2016 by Mathieu Giraud
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algo/core/segment.cpp algo/core/segment.cpp +3 -1

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--- a/algo/core/segment.cpp
+++ b/algo/core/segment.cpp
@@ -1105,7 +1105,9 @@ json FineSegmenter::toJson(){
    if (CDR3start >= 0) {
        seg["cdr3"] = {
            {"start", CDR3start},
-            {"stop", CDR3end}
+            {"stop", CDR3end},
+            {"aa", CDR3aa},
+            {"productive", CDR3productive}
        };
    }
  }