Commit 59124fdd authored by Mathieu Giraud's avatar Mathieu Giraud

tools/vdj_assign.cpp: no need of explicit reverse conversion anymore

parent 7efddc09
......@@ -89,10 +89,6 @@ int main(int argc, const char** argv)
align_against_collection(read, interestingV, -1, false, false, false, &box_V, VDJ);
align_against_collection(read, interestingJ, -1, false, true, false, &box_J, VDJ);
// This should be handled directly into align_against_collection
box_J.start = box_J.end ;
box_J.del_left = box_J.del_right;
box_J.end = read.size() - 1;
int align_V_length = min(GENE_ALIGN, box_V.end - box_V.start + 1);
int align_J_length = min(GENE_ALIGN, (int)read.size() - box_J.start + 1);
......
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