tests: testing compressed .fa.gz input

58532415 · Mathieu Giraud · Mikaël Salson · 9cb028d2 · 58532415 · 58532415
Commit 58532415 authored Nov 07, 2014 by Mathieu Giraud Committed by Mikaël Salson Nov 07, 2014
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algo/tests/gzip.should_get algo/tests/gzip.should_get +7 -0

data/clones_simul.fa.gz data/clones_simul.fa.gz +0 -0

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--- a/algo/tests/gzip.should_get
+++ b/algo/tests/gzip.should_get
+!LAUNCH: ../../vidjil -G ../../germline/IGH ../../data/clones_simul.fa > out-fa ;  ../../vidjil -G ../../germline/IGH -b clones_simul ../../data/clones_simul.fa.gz > out-fa-gz ; diff -s -I '\#' -I 'index' -I 'data/clones_simul' out-fa out-fa-gz ; wc -l out-fa-gz
+$ Identical output
+1: out-fa .* out-fa-gz .* identical
+$ Testing out-fa-gz has approximately 69 lines
+1: [67]. out-fa-gz
--- a/data/clones_simul.fa.gz
+++ b/data/clones_simul.fa.gz